Shopify Warehouse Management Services

Need Shopify warehouse management that keeps stock counts right at every warehouse and 3PL you fulfill orders from? We set up a Shopify location for each one, connect your WMS, ERP or 3PL, route each order to the right warehouse and bring tracking numbers and stock back into Shopify.

Book a Discovery Call Our Work

16+

Years in business

500+

Projects Delivered

65+

Team Members

98%

Client Retention

US, UK and EU

One Shopify store routing orders to ShipBob and ogoShip by market

ShipBob fulfills Simucube's US and UK orders, and ogoShip fulfills its EU orders. We connected both 3PLs through their Shopify apps and configured the order routing, default location and inventory policy for each market. Our 3PL integration page has more on 3PL setups.

Automatic

Tracking and stock updates from STX's ERP, with no manual entry

We set up scheduled Matrixify jobs that export STX's Shopify orders to its AS/400 ERP, filtered by warehouse. The tracking numbers AS/400 sends back mark each order fulfilled in Shopify and lower stock at the warehouse it shipped from.

NetSuite

Inventory and order flows between Shopify and NetSuite for GEN-Y Hitch

We designed the architecture and set up the product, inventory, price list, order and order status flows between Shopify and NetSuite, so stock and order status stay in step across both systems.

IFS Cloud

Inventory, order status and shipment sync from IFS Cloud for Siffron

Siffron's store receives inventory, order status and shipment updates from its IFS Cloud ERP through sync flows we set up, so stock and shipment status reach the store without anyone updating it by hand.

"This has been the most impressive vendor partnership I have experienced. Every meeting felt purposeful, every milestone was clear, and the process was incredibly well-supported from start to finish."

Kendra Borkholder, Operations Support, GEN-Y Hitch

What Shopify warehouse management covers

Shopify warehouse management means every warehouse and 3PL you fulfill orders from is set up as a location in Shopify with its own stock count, and every order goes to the location that should fulfill it. We connect Shopify to the system each warehouse uses, whether that is a WMS, your ERP or your 3PL's software, so orders, tracking numbers, returns and stock counts update Shopify without anyone keying them in.

A Shopify location for each warehouse and 3PL
Stock synced by location from your WMS, ERP or 3PL
Order routing to the right warehouse or market
Tracking numbers sent back to Shopify, with the order marked fulfilled
Returns and credit memos sent to your ERP or warehouse system
Aisle and bin locations imported into Shopify

Compared on	Shero Commerce	Shopify's native inventory tools	A WMS like ShipHero	An in-house operations lead
Stock by warehouse	We sync stock from each warehouse and 3PL to its own location.	Tracks stock per location; counts are updated by hand or by an app.	Tracks stock by bin and zone inside each warehouse.	Knows the warehouse well but still needs a system to update Shopify.
Order routing	We set the routing rules so each order goes to the location that should fulfill it.	Included routing rules by location and market.	Picks and packs the orders it receives from Shopify.	Moves orders between locations by hand when stock is short.
Tracking and fulfillment status	We fulfill the order and lower stock at the location that shipped it, using the tracking the warehouse sends.	Staff add tracking numbers by hand, or a shipping app adds them.	Sends tracking back through its Shopify app.	Can fix errors, but updates stay manual without an integration.
Older systems without an API	We move stock, orders and tracking as scheduled files with Matrixify.	Needs an app or a developer to read files from other systems.	Depends on the connectors the WMS vendor offers.	Uploads spreadsheets by hand.
How you pay	Paid discovery, then an accurate estimate.	Part of your Shopify subscription.	Monthly WMS subscription from ShipHero.	A full-time salary.

Shero Commerce

Stock by warehouse We sync stock from each warehouse and 3PL to its own location.

Order routing We set the routing rules so each order goes to the location that should fulfill it.

Tracking and fulfillment status We fulfill the order and lower stock at the location that shipped it, using the tracking the warehouse sends.

Older systems without an API We move stock, orders and tracking as scheduled files with Matrixify.

How you pay Paid discovery, then an accurate estimate.

Compared with

Shopify's native inventory tools

Stock by warehouse Tracks stock per location; counts are updated by hand or by an app.

Order routing Included routing rules by location and market.

Tracking and fulfillment status Staff add tracking numbers by hand, or a shipping app adds them.

Older systems without an API Needs an app or a developer to read files from other systems.

How you pay Part of your Shopify subscription.

A WMS like ShipHero

Stock by warehouse Tracks stock by bin and zone inside each warehouse.

Order routing Picks and packs the orders it receives from Shopify.

Tracking and fulfillment status Sends tracking back through its Shopify app.

Older systems without an API Depends on the connectors the WMS vendor offers.

How you pay Monthly WMS subscription from ShipHero.

An in-house operations lead

Stock by warehouse Knows the warehouse well but still needs a system to update Shopify.

Order routing Moves orders between locations by hand when stock is short.

Tracking and fulfillment status Can fix errors, but updates stay manual without an integration.

Older systems without an API Uploads spreadsheets by hand.

How you pay A full-time salary.

01

We set up Shopify's own inventory tools first

Shopify already tracks stock by location, moves stock between locations with transfers and routes orders by rules you set. We configure those first, add an app where Shopify falls short and write custom code only where nothing else works. Our order management integration page covers routing across systems.

02

We agree which system owns each number

Before we set anything up, we agree with you which system owns stock, orders and tracking for each location. Shopify then takes its counts from that system, so your team stops correcting the same number in two places.

03

We import aisle and bin locations into Shopify

If your ERP or WMS keeps aisle and bin locations, we can import them into Shopify every day along with stock status and show them on your product pages.

04

Shipping rates at checkout follow the warehouse that sends the order

Your dedicated team sets up your shipping profiles and delivery options by location, so the rates at checkout match the warehouse that sends the order.

05

We work with your 3PL and your ERP partner

When your 3PL, WMS vendor or ERP partner owns their side of the connection, we handle the Shopify side, including locations, SKU mapping, shipping method mapping and testing with their team. Our WMS integration page covers larger warehouse systems.

06

We add new warehouses and 3PLs as you grow

When you open a new warehouse or move stock to a new 3PL, we add the location, the routing and the sync. For a P1 issue such as your store going down or checkout breaking, we reply within 1 hour.

Food manufacturing

Deacomwebsite and Goldbelly marketplace orders sent to the ERP automatically, with no hand entry

BigCommercestore moved from WooCommerce to BigCommerce

Vienna BeefBigCommerce

Read the case study

Musical instruments

iPaaS.comstore connected to NCR Counterpoint, set up and tested by our team

Custom browsinggrid and list view, image and video toggle and frequently bought together

Memphis Drum ShopShopify

Read the case study

Entertainment

Custom appcredit based checkout rebuilt in a custom Shopify app

+40%faster page loads than legacy Magento

Regal CinemasShopify

Read the case study

Towing Equipment

GEN-Y Hitch

GEN-Y Hitch, an American maker of heavy-duty towing hitches and accessories, had outgrown WooCommerce. Shero moved them to Shopify with one store for B2B and D2C buyers, a NetSuite ERP integration, and navigation organized by use case.

GEN-Y Hitch

Tattoo and Piercing Supplies

Painful Pleasures

Painful Pleasures is a long-standing supplier of body jewelry and tattoo supplies with a catalog of 40,000+ products. The brand partnered with Shero to complete a stalled Magento to Shopify migration and deliver the complex custom features their business depends on. They reduced ongoing maintenance costs and eliminated urgent site issues that had previously caused headaches by 40%.

Painful Pleasures

Hot Dogs and Sausages

Vienna Beef

Discover how Shero Commerce migrated Vienna Beef from WooCommerce to BigCommerce Enterprise, consolidating 3 Third-party sales channels into their ERP, reducing manual effort and errors, and delivering a custom datepicker for delivery scheduling. Vendor purchasing workflows that were previously manual are now 100% fully automated.

Vienna Beef

Leadership Education

CCL - Center for Creative Leadership

Shero moved the Center for Creative Leadership, a global nonprofit, from iApps to Magento 2. We integrated Microsoft Dynamics 365 and VitalSource, set up international selling, and improved the store and checkout on every device.

CCL - Center for Creative Leadership

One version of your inventory and orders

When Shopify and your back office disagree, you oversell, send orders out late or chase invoices. We build the sync so both sides match.

Inventory
Stock levels synced from your ERP or warehouse so Shopify never sells what you do not have.
Orders
Orders flow to your ERP with taxes, discounts and shipping in the right fields.
Products and pricing
Products, price lists and B2B pricing pushed from your system of record.
Monitoring
Failed syncs flagged and retried before they turn into customer emails.

Shipping from more than one warehouse or 3PL? Let's talk about your setup.

Plan my warehouse integration

01

Discovery
In recorded workshops we walk through how stock is received, shipped, returned and adjusted in each warehouse. We agree the scope and acceptance criteria before any development work starts.
02

Mapping
We map each warehouse and 3PL to a Shopify location and match SKUs, shipping methods and order fields between the systems. Your team signs off on the mapping before we start development.
03

Develop
We connect stock, orders, tracking and returns between Shopify and your warehouse systems, with the new sync switched off on your live store.
04

Testing and UAT
We place test orders and compare stock counts in both systems for every location. Your warehouse team checks the results, logs issues in BugHerd and signs off when the counts match.
05

Go-live and hypercare
We switch off the old inventory sync before the new one starts. Then we watch the first orders and stock updates closely and fix anything that does not match.

Frequently asked questions.

Can't find what you're looking for? Reach out to our team.

01

Do we need a WMS, or can we manage our warehouse stock in Shopify?

02

How much does Shopify warehouse management cost, and how long does it take?

03

Can we keep our current WMS and 3PL when we set up warehouse management in Shopify?

04

Do you work with our in-house operations and IT team?

05

What happens on the first call about our warehouse setup, and what should we bring?

06

What do we get after the first call about our warehouse integration?

What our clients say.

We design experiences that make a difference. See what our clients have to say about working with us.

Justrite Safety Group

"The collaboration between us and Shero Commerce on the Justrite multi-store site went beyond what we had hoped for. They are a terrific partner to work with. Their team’s dedication to understanding our unique requirements and delivering a high-quality, customized solution has greatly enhanced our online presence. The new website not only showcases our products effectively but also streamlines the shopping experience for our customers. We couldn’t be happier with the results and look forward to working with Shero Commerce on future projects."

Douglas J. Stang

VP of eCommerce / Justrite Safety Group

Benchmade Knife Co.

"I wanted to take a moment to thank you all for a very successful launch! I know there was a lot of great work put in by everyone to make this happen. Our accounting and sales teams are thrilled to have this functionality working, and that means our customers are also taking full advantage of these enhancements. We appreciate the partnership in the development and testing, and are looking forward to more enhancements in the future."

Bren Rafaelly

Head of Digital Transformation / Benchmade Knife Co.

Benchmade Knife Co.

"Working with Shero Commerce for the past three years has been a game-changer for our B2B eCommerce business.Their expertise in email marketing, website support, and eCommerce strategy has significantly improved our online presence and optimized our B2B operations.The team’s dedication to our success is evident, and we’re excited to continue our partnership with them. If you’re looking for a reliable and results-driven eCommerce agency, look no further than Shero."

Joe Prebich

VP of Marketing / Benchmade Knife Co.

GEN-Y Hitch

"This has been the most impressive vendor partnership I have experienced. Every meeting felt purposeful, every milestone was clear, and the process was incredibly well-supported from start to finish. Shero delivered a seamless Shopify migration."

Kendra Borkholder

Operations Support / GEN-Y Hitch

And you?

Let's build something great together.

Ready to scale your eCommerce business? Tell us about your project and we'll get back to you within 24 hours.

Email

[email protected]

Locations

New York • London • Helsinki • Tirana

Shopify Warehouse Management Services

What Shopify warehouse management covers